TIARA: a database for accurate analysis of multiple personal genomes based on cross-technology
نویسندگان
چکیده
High-throughput genomic technologies have been used to explore personal human genomes for the past few years. Although the integration of technologies is important for high-accuracy detection of personal genomic variations, no databases have been prepared to systematically archive genomes and to facilitate the comparison of personal genomic data sets prepared using a variety of experimental platforms. We describe here the Total Integrated Archive of Short-Read and Array (TIARA; http://tiara.gmi.ac.kr) database, which contains personal genomic information obtained from next generation sequencing (NGS) techniques and ultra-high-resolution comparative genomic hybridization (CGH) arrays. This database improves the accuracy of detecting personal genomic variations, such as SNPs, short indels and structural variants (SVs). At present, 36 individual genomes have been archived and may be displayed in the database. TIARA supports a user-friendly genome browser, which retrieves read-depths (RDs) and log2 ratios from NGS and CGH arrays, respectively. In addition, this database provides information on all genomic variants and the raw data, including short reads and feature-level CGH data, through anonymous file transfer protocol. More personal genomes will be archived as more individuals are analyzed by NGS or CGH array. TIARA provides a new approach to the accurate interpretation of personal genomes for genome research.
منابع مشابه
TIARA genome database: update 2013
The Total Integrated Archive of short-Read and Array (TIARA; http://tiara.gmi.ac.kr) database stores and integrates human genome data generated from multiple technologies including next-generation sequencing and high-resolution comparative genomic hybridization array. The TIARA genome browser is a powerful tool for the analysis of personal genomic information by exploring genomic variants such ...
متن کاملAnalysis of User query refinement behavior based on semantic features: user log analysis of Ganj database (IranDoc)
Background and Aim: Information systems cannot be well designed or developed without a clear understanding of needs of users, manner of their information seeking and evaluating. This research has been designed to analyze the Ganj (Iranian research institute of science and technology database) users’ query refinement behaviors via log analysis. Methods: The method of this research is log anal...
متن کاملDevelopment of a GEP model to assess CERCHAR abrasivity index of rocks based on geomechanical properties
The CERCHAR abrasivity test is very popular for determination of rock abrasivity. An accurate estimation of the CERCHAR abrasivity index (CAI) is useful for excavation operation costs. This paper presents a model to calculate CAI based on the gene expression programming (GEP) approach. This model is trained and tested based on a database collected from the experimental results available in the ...
متن کاملVisualizing Multiple System Atrophy Studies Based on Collaboration Network and Centrality Indices in Web of Science Database
Introduction: Social network analysis is an analytical method based on graph theories that identifies relationships between individuals or factors to analyze the social structures resulted from those relationships. The objective of this study was to analyze co-authorship and co-word networks based on scientometric indicators and centrality measures in the studies on multiple atrophy system dise...
متن کاملVisualizing Multiple System Atrophy Studies Based on Collaboration Network and Centrality Indices in Web of Science Database
Introduction: Social network analysis is an analytical method based on graph theories that identifies relationships between individuals or factors to analyze the social structures resulted from those relationships. The objective of this study was to analyze co-authorship and co-word networks based on scientometric indicators and centrality measures in the studies on multiple atrophy system dise...
متن کامل